Jeffrey Skolnick
Skolnick, Jeffrey, 1953-
Skolnick, Jeffrey
VIAF ID: 116742550 (Personal)
Permalink: http://viaf.org/viaf/116742550
Preferred Forms
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Jeffrey Skolnick
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Jeffrey Skolnick
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Skolnick, Jeffrey
(sparse)
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100 1 _ ‡a Skolnick, Jeffrey ‡d (1953- ).
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100 1 0
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Skolnick, Jeffrey,
‡d
1953-
4xx's: Alternate Name Forms (3)
Works
| Title | Sources |
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| Cross-reactivity virtual profiling of the human kinome by X-react(KIN): a chemical systems biology approach |
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| ENTPRISE: An Algorithm for Predicting Human Disease-Associated Amino Acid Substitutions from Sequence Entropy and Predicted Protein Structures |
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| Fast procedure for reconstruction of full-atom protein models from reduced representations. |
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| FINDSITE: a combined evolution/structure-based approach to protein function prediction |
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| FINDSITE: A New Approach for Virtual Ligand Screening of Proteins and Virtual Target Screening of Biomolecules |
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| FINDSITE: a threading-based approach to ligand homology modeling |
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| FINDSITE(X): a structure-based, small molecule virtual screening approach with application to all identified human GPCRs |
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| GOAP: a generalized orientation-dependent, all-atom statistical potential for protein structure prediction |
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| GS-align for glycan structure alignment and similarity measurement. |
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| High precision multi-genome scale reannotation of enzyme function by EFICAz |
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| How Well is Enzyme Function Conserved as a Function of Pairwise Sequence Identity? |
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| Hurt, tired and queasy: Specific variants in the ATPase domain of the TRAP1 mitochondrial chaperone are associated with common, chronic "functional" symptomatology including pain, fatigue and gastrointestinal dysmotility |
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| iAlign: a method for the structural comparison of protein-protein interfaces |
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| Identification of metabolites with anticancer properties by computational metabolomics |
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| Implications of the small number of distinct ligand binding pockets in proteins for drug discovery, evolution and biochemical function |
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| Improving threading algorithms for remote homology modeling by combining fragment and template comparisons |
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| Insights into Disease-Associated Mutations in the Human Proteome through Protein Structural Analysis |
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| Insights into the slow-onset tight-binding inhibition of Escherichia coli dihydrofolate reductase: detailed mechanistic characterization of pyrrolo [3,2-f] quinazoline-1,3-diamine and its derivatives as novel tight-binding inhibitors |
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| Krylov subspace methods for computing hydrodynamic interactions in brownian dynamics simulations |
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| Large-scale assessment of the utility of low-resolution protein structures for biochemical function assignment. |
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| Lattice models of protein folding, dynamics and thermodynamics |
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| Learning Protein Folding Energy Functions |
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| LIGSIFT: an open-source tool for ligand structural alignment and virtual screening |
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| Local energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding. |
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| MEDICASCY: A Machine Learning Approach for Predicting Small-Molecule Drug Side Effects, Indications, Efficacy, and Modes of Action |
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| Metabolomics identifies the intersection of phosphoethanolamine with menaquinone-triggered apoptosis in an in vitro model of leukemia |
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| Microbial genomes have over 72% structure assignment by the threading algorithm PROSPECTOR_Q. |
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| A minimal physically realistic protein-like lattice model: designing an energy landscape that ensures all-or-none folding to a unique native state |
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| The mosaic genome of Anaeromyxobacter dehalogenans strain 2CP-C suggests an aerobic common ancestor to the delta-proteobacteria |
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| New benchmark metrics for protein-protein docking methods |
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| Numerical study of the entropy loss of dimerization and the folding thermodynamics of the GCN4 leucine zipper |
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| On the importance of composite protein multiple ligand interactions in protein pockets |
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| On the origin and highly likely completeness of single-domain protein structures. |
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| On the role of physics and evolution in dictating protein structure and function |
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| Origin of intrinsic 3(10)-helix versus strand stability in homopolypeptides and its implications for the accuracy of the Amber force field. |
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| The PDB is a covering set of small protein structures |
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| Performance of the Pro-sp3-TASSER server in CASP8 |
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| Perspective: On the importance of hydrodynamic interactions in the subcellular dynamics of macromolecules |
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| Pocket detection and interaction-weighted ligand-similarity search yields novel high-affinity binders for Myocilin-OLF, a protein implicated in glaucoma. |
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| PoLi: A Virtual Screening Pipeline Based on Template Pocket and Ligand Similarity. |
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| Prediction of physical protein-protein interactions |
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| Protein fragment reconstruction using various modeling techniques |
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| Protein model quality assessment prediction by combining fragment comparisons and a consensus C(alpha) contact potential |
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| Protein model refinement using an optimized physics-based all-atom force field |
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| The protein structure prediction problem could be solved using the current PDB library |
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| Putting the pathway back into protein folding |
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| Q-Dock(LHM): Low-resolution refinement for ligand comparative modeling. |
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| Q-Dock: Low-resolution flexible ligand docking with pocket-specific threading restraints |
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| Rational Design of Novel Allosteric Dihydrofolate Reductase Inhibitors Showing Antibacterial Effects on Drug-Resistant Escherichia coli Escape Variants |
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| Repurposing FDA-approved drugs for anti-aging therapies |
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| Restricted N-glycan conformational space in the PDB and its implication in glycan structure modeling |
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| Segment assembly, structure alignment and iterative simulation in protein structure prediction |
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| Sliding of proteins non-specifically bound to DNA: Brownian dynamics studies with coarse-grained protein and DNA models |
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| SPICKER: a clustering approach to identify near-native protein folds |
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| Structural space of protein-protein interfaces is degenerate, close to complete, and highly connected |
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| Structure modeling of all identified G protein-coupled receptors in the human genome |
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| TASSER-based refinement of NMR structures |
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| TASSER-Lite: an automated tool for protein comparative modeling |
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| TASSER_low-zsc: an approach to improve structure prediction using low z-score-ranked templates |
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| TASSER_WT: a protein structure prediction algorithm with accurate predicted contact restraints for difficult protein targets |
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| Template-based protein structure modeling using TASSER(VMT.). |
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| Tertiary structure predictions on a comprehensive benchmark of medium to large size proteins |
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| Theory and simulation. |
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| A threading-based method for the prediction of DNA-binding proteins with application to the human genome. |
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| TM-align: a protein structure alignment algorithm based on the TM-score |
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| TOUCHSTONEX: protein structure prediction with sparse NMR data. |
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| Tribute to Harold A. Scheraga |
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| Unfolding of globular proteins: monte carlo dynamics of a realistic reduced model |
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| Use of residual dipolar couplings as restraints in ab initio protein structure prediction. |
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| The utility of geometrical and chemical restraint information extracted from predicted ligand-binding sites in protein structure refinement |
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| What is the relationship between the global structures of apo and holo proteins? |
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| Why Is There a Glass Ceiling for Threading Based Protein Structure Prediction Methods? |
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| Why not consider a spherical protein? Implications of backbone hydrogen bonding for protein structure and function |
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