2019-novel Coronavirus (2019-nCoV): estimating the case fatality rate - a word of caution |
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APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016 |
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Applying spectral fingerprinting to the analysis of FRET images |
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Asynchrony between virus diversity and antibody selection limits influenza virus evolution |
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Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens |
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Blind Decomposition of Spectral Imaging Microscopy: A Study on Artificial and Real Test Data |
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Blind Source Separation Techniques For The Decomposition Of Multiply Labeled Fluorescence Images |
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Challenges with using primer IDs to improve accuracy of next generation sequencing |
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Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics |
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Characterization of genetic diversity in the nematode Pristionchus pacificus from population-scale resequencing data |
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Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology |
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Competition between recombination and epistasis can cause a transition from allele to genotype selection |
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Correlated evolution of nearby residues in Drosophilid proteins |
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COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation |
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COVID-19 Scenarios: an interactive tool to explore the spread and associated morbidity and mortality of SARS-CoV-2 |
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Cryptic transmission of SARS-CoV-2 in Washington State |
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DNA as a programmable viscoelastic nanoelement |
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Dynamic aspects of DNA DNA-slippage and nucleosome dynamics |
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Dynamic mutation-selection balance as an evolutionary attractor |
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Efficient inference, potential, and limitations of site-specific substitution models |
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Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020 |
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Emergence of clones in sexual populations |
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Error rates, PCR recombination, and sampling depth in HIV-1 whole genome deep sequencing |
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Establishment and stability of the latent HIV-1 DNA reservoir. |
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Estimating the strength of selective sweeps from deep population diversity data. |
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Estimating time of HIV-1 infection from next-generation sequence diversity |
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Evaluation of two workflows for whole genome sequencing-based typing of influenza A viruses |
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Évolution des protéines et paysages de séquences guidés par les données. |
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FFPopSim: an efficient forward simulation package for the evolution of large populations |
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Fitness effects of mutations to SARS-CoV-2 proteins |
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Fluctuations of fitness distributions and the rate of Muller's ratchet. |
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Force-induced DNA slippage |
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Genealogies of rapidly adapting populations |
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Genetic diversity in the interference selection limit. |
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Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020 |
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High-resolution influenza mapping of a city reveals socioeconomic determinants of transmission within and between urban quarters |
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HIV Cell-to-Cell Spread Results in Earlier Onset of Viral Gene Expression by Multiple Infections per Cell |
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Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform |
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In-vivo mutation rates and fitness landscape of HIV-1 |
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Incomplete inhibition of HIV infection results in more HIV infected lymph node cells by reducing cell death. |
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Inferring HIV Escape Rates from Multi-Locus Genotype Data |
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Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution |
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Intermediate phase in DNA melting |
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Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing |
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Investigate the origins of COVID-19 |
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Kinetic accessibility of buried DNA sites in nucleosomes |
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Mathematical modeling of escape of HIV from cytotoxic T lymphocyte responses. |
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Nextclade: clade assignment, mutation calling and quality control for viral genomes |
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nextflu: real-time tracking of seasonal influenza virus evolution in humans |
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Novel SARS-CoV-2 variants: the pandemics within the pandemic |
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Optimal Flexibility for Conformational Transitions in Macromolecules |
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panX: pan-genome analysis and exploration |
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PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern |
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Phylodynamic theory of persistence, extinction and speciation of rapidly adapting pathogens |
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Population genomics of intrapatient HIV-1 evolution |
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Potential impact of seasonal forcing on a SARS-CoV-2 pandemic |
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Predicting evolution from the shape of genealogical trees |
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Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses. |
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Predictive Modeling of Influenza Shows the Promise of Applied Evolutionary Biology. |
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Protein evolution and data-driven sequence landscapes |
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Quantifying selection against synonymous mutations in HIV-1 env evolution. |
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Quantifying the range of a lipid phosphate signal in vivo |
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Quantitative contribution of efflux to multi-drug resistance of clinical Escherichia coli and Pseudomonas aeruginosa strains |
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Rapid and consistent evolution of colistin resistance in Pseudomonas aeruginosa during morbidostat culture |
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Real-time analysis and visualization of pathogen sequence data |
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Recombination rate and selection strength in HIV intra-patient evolution |
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Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable |
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Seasonal influenza circulation patterns and projections for Sep 2017 to Sep 2018 |
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Stability of association between Arabidopsis thaliana and Pseudomonas pathogens over evolutionary time scales |
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Statistical genetics and evolution of quantitative traits |
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Symposium report: One Health meets sequencing |
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Target search on a dynamic DNA molecule. |
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Temporal dynamics of gene expression and histone marks at the Arabidopsis shoot meristem during flowering |
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Topological estimation of percolation thresholds |
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TreeTime: Maximum-likelihood phylodynamic analysis |
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