Cole Trapnell Assistant Professor in the Department of Genome Sciences at the University of Washington
Trapnell, Bruce C. (Bruce Colston), 1982-
VIAF ID: 136466742 (Personal)
Permalink: http://viaf.org/viaf/136466742
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Works
| Title | Sources |
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| IL-2 enhances ex vivo-expanded regulatory T-cell persistence after adoptive transfer |
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| The accessible chromatin landscape of the murine hippocampus at single-cell resolution |
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| Activated CARD11 accelerates germinal center kinetics, promoting mTORC1 and terminal differentiation |
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| Aligning Single-Cell Developmental and Reprogramming Trajectories Identifies Molecular Determinants of Myogenic Reprogramming Outcome |
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| The anatomy of successful computational biology software |
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| Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species |
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| Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data. |
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| The cis-regulatory dynamics of embryonic development at single cell resolution |
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| A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development. |
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| Comprehensive single-cell transcriptional profiling of a multicellular organism. |
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| Connect-seq to superimpose molecular on anatomical neural circuit maps |
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| crisprQTL mapping as a genome-wide association framework for cellular genetic screens |
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| cummeRbund |
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| Defining cell types and states with single-cell genomics |
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| Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks |
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| Dimensionality reduction by UMAP to visualize physical and genetic interactions |
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| The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells |
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| Engineering a niche supporting hematopoietic stem cell development using integrated single-cell transcriptomics |
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| Extreme heterogeneity of influenza virus infection in single cells |
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| Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. |
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| High-throughput, microscope-based sorting to dissect cellular heterogeneity |
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| High-throughput sequence alignment using Graphics Processing Units |
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| Highly scalable generation of DNA methylation profiles in single cells |
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| How to map billions of short reads onto genomes |
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| A human cell atlas of fetal gene expression |
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| Improving RNA-Seq expression estimates by correcting for fragment bias |
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| Inferring Causal Gene Regulatory Networks from Coupled Single-Cell Expression Dynamics Using Scribe |
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| Integrative Analyses of Human Reprogramming Reveal Dynamic Nature of Induced Pluripotency |
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| Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses |
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| iPSC-Derived Macrophages Effectively Treat Pulmonary Alveolar Proteinosis in Csf2rb-Deficient Mice |
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| A-kinase-anchoring protein 1 (dAKAP1)-based signaling complexes coordinate local protein synthesis at the mitochondrial surface |
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| LIN28 Regulates Stem Cell Metabolism and Conversion to Primed Pluripotency |
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| A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution |
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| Long noncoding RNAs regulate adipogenesis |
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| Massively multiplex chemical transcriptomics at single-cell resolution |
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| Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing |
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| Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq) |
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| On the design of CRISPR-based single cell molecular screens |
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| Optimizing Data Intensive GPGPU Computations for DNA Sequence Alignment |
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| A Peninsular Structure Coordinates Asynchronous Differentiation with Morphogenesis to Generate Pancreatic Islets |
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| A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition |
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| The promise of single-cell genomics in plants |
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| Pulmonary macrophage transplantation therapy |
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| Reversed graph embedding resolves complex single-cell trajectories. |
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| Scalable and efficient single-cell DNA methylation sequencing by combinatorial indexing |
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| Sci-fate characterizes the dynamics of gene expression in single cells |
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| SHAPE-Seq: High-Throughput RNA Structure Analysis |
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| Single-cell mRNA quantification and differential analysis with Census |
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| Single-Cell Multi-omics: An Engine for New Quantitative Models of Gene Regulation |
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| The single-cell transcriptional landscape of mammalian organogenesis |
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| Single-cell transcriptome sequencing: recent advances and remaining challenges |
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| Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures |
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| Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis |
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| Supervised classification enables rapid annotation of cell atlases |
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| Systematic reconstruction of cellular trajectories across mouse embryogenesis |
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| Targeted RNA sequencing reveals the deep complexity of the human transcriptome |
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| Targeting TWIST1 through loss of function inhibits tumorigenicity of human glioblastoma. |
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| Thyroid hormone regulates distinct paths to maturation in pigment cell lineages |
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| TopHat: discovering splice junctions with RNA-Seq |
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| TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions |
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| Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre |
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| Trajectory analysis quantifies transcriptional plasticity during macrophage polarization |
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| Transcript assembly and abundance estimation with high-throughput RNA sequencing, 2010: |
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| Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation |
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| Transcriptional and epigenetic dynamics during specification of human embryonic stem cells |
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| Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. |
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| Ultrafast and memory-efficient alignment of short DNA sequences to the human genome |
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| What Is Your Conceptual Definition of "Cell Type" in the Context of a Mature Organism? |
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| Wnt Signaling Separates the Progenitor and Endocrine Compartments during Pancreas Development |
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