James O. McInerney
McInerney, James O.
VIAF ID: 100781008 (Personal)
Permalink: http://viaf.org/viaf/100781008
Preferred Forms
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100 0 _
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James O. McInerney
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100 1 _
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McInerney, James O.
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100 1 _ ‡a McInerney, James O.
4xx's: Alternate Name Forms (5)
Works
| Title | Sources |
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| Adaptive evolution of the human fatty acid synthase gene: support for the cancer selection and fat utilization hypotheses? |
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| An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences |
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| Analysis of gene expression in the bovine corpus luteum through generation and characterisation of 960 ESTs |
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| Bipartite network analysis of gene sharings in the microbial world |
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| Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines |
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| The causes of protein evolutionary rate variation |
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| Characterization of endospore-forming bacteria associated with entomopathogenic nematodes, Heterorhabditis spp., and description of Paenibacillus nematophilus sp. nov. |
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| Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations |
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| Detecting adaptive molecular evolution: additional tools for the parasitologist |
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| Does a tree-like phylogeny only exist at the tips in the prokaryotes? |
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| EGN: a wizard for construction of gene and genome similarity networks |
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| Endosymbiotic origin and differential loss of eukaryotic genes |
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| Eukaryotic genes in Mycobacterium tuberculosis? Possible alternative explanations |
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| Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function |
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| "Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis |
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| Evidence for heterogeneous selective pressures in the evolution of the env gene in different human immunodeficiency virus type 1 subtypes |
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| Evidence of positive Darwinian selection in putative meningococcal vaccine antigens |
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| Evolution: A four billion year old metabolism. |
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| Evolutionary analyses of non-genealogical bonds produced by introgressive descent |
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| Evolutionary developmental biology: Ghost locus appears |
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| Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplication |
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| Function-related replacement of bacterial siderophore pathways. |
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| Gene evolution and drug discovery |
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| Gene-gene relationships in an Escherichia coli accessory genome are linked to function and mobility |
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| Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models |
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| Gene similarity networks provide tools for understanding eukaryote origins and evolution |
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| Genetics. Paradigm for life. |
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| Genome Phylogenies Indicate a Meaningful α-Proteobacterial Phylogeny and Support a Grouping of the Mitochondria with the Rickettsiales |
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| Heterogeneous models place the root of the placental mammal phylogeny |
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| Horizontal gene flow from Eubacteria to Archaebacteria and what it means for our understanding of eukaryogenesis |
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| Horizontal gene transfer is less frequent in eukaryotes than prokaryotes but can be important (retrospective on DOI 10.1002/bies.201300095). |
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| The human genome retains relics of its prokaryotic ancestry: human genes of archaebacterial and eubacterial origin exhibit remarkable differences |
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| Increased genome sampling reveals a dynamic relationship between gene duplicability and the structure of the primate protein-protein interaction network. |
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| Integration of two ancestral chaperone systems into one: the evolution of eukaryotic molecular chaperones in light of eukaryogenesis |
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| Metazoan opsin evolution reveals a simple route to animal vision |
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| A method for inferring the rate of evolution of homologous characters that can potentially improve phylogenetic inference, resolve deep divergence and correct systematic biases |
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| Microbiology: Mind the gaps in cellular evolution. |
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| Molecular evidence for dim-light vision in the last common ancestor of the vertebrates |
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| The molecular phylogeny of a nematode-specific clade of heterotrimeric G-protein alpha-subunit genes. |
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| Molecular phylogeny of the Drosophila tripunctata and closely related species groups (Diptera: Drosophilidae). |
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| More than tree dimensions: inter-lineage evolution's ecological importance |
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| MultiPhyl: a high-throughput phylogenomics webserver using distributed computing |
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| The network of life, 2009: |
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| Networks: expanding evolutionary thinking |
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| New approaches for unravelling reassortment pathways |
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| On the desirability of models for inferring genome phylogenies |
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| The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa |
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| Origins of major archaeal clades correspond to gene acquisitions from bacteria |
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| Planctomycetes and eukaryotes: a case of analogy not homology |
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| Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears |
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| The prokaryotic tree of life: past, present... and future? |
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| Recurring cluster and operon assembly for Phenylacetate degradation genes |
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| Reply to 'The population genetics of pangenomes'. |
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| The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data |
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| The role of public goods in planetary evolution |
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| The shape of supertrees to come: tree shape related properties of fourteen supertree methods |
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| SMBE Satellite meeting on reticulated microbial evolution 2014--meeting report |
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| Society for Molecular Biology and Evolution, Council and Business Meetings, 2015, Vienna Austria |
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| Supertrees disentangle the chimerical origin of eukaryotic genomes |
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| Systemic effects of deep brain stimulation on synergic control in Parkinson's disease. |
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| Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1. |
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| TOPD/FMTS: a new software to compare phylogenetic trees |
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| Translational selection frequently overcomes genetic drift in shaping synonymous codon usage patterns in vertebrates |
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| The tree of genomes: an empirical comparison of genome-phylogeny reconstruction methods |
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| Trees from trees: construction of phylogenetic supertrees using clann |
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| Why prokaryotes have pangenomes |
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