Adult pallium transcriptomes surprise in not reflecting predicted homologies across diverse chicken and mouse pallial sectors. |
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Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome |
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Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes |
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A bioinformatics approach for determining sample identity from different lanes of high-throughput sequencing data |
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Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes |
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Computational techniques in comparative genomics, 2005: |
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Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons |
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Early history of mammals is elucidated with the ENCODE multiple species sequencing data |
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Exon capture analysis of G protein-coupled receptors identifies activating mutations in GRM3 in melanoma. |
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An expressed fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs |
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Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection |
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Gene expression in donor corneal endothelium |
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Genome-wide ChIP-Seq reveals a dramatic shift in the binding of the transcription factor erythroid Kruppel-like factor during erythrocyte differentiation |
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Genome-wide DNA methylation profiles in hematopoietic stem and progenitor cells reveal overrepresentation of ETS transcription factor binding sites |
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Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS) |
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Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci |
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A high-resolution map of human evolutionary constraint using 29 mammals |
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High-resolution mapping and characterization of open chromatin across the genome |
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Human NPY promoter variation rs16147:T>C as a moderator of prefrontal NPY gene expression and negative affect |
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project |
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Large-scale sequencing of the CD33-related Siglec gene cluster in five mammalian species reveals rapid evolution by multiple mechanisms |
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Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements |
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Local DNA topography correlates with functional noncoding regions of the human genome |
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Mutational signatures of de-differentiation in functional non-coding regions of melanoma genomes |
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National Cancer Institute Prostate Cancer Genetics Workshop |
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A new strategy for genome assembly using short sequence reads and reduced representation libraries |
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Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler |
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Rapid whole-genome sequencing for genetic disease diagnosis in neonatal intensive care units |
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A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree |
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Sequencing studies in human genetics: design and interpretation. |
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SNPs in Multi-species Conserved Sequences (MCS) as useful markers in association studies: a practical approach |
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Somatic mutations in MAP3K5 attenuate its proapoptotic function in melanoma through increased binding to thioredoxin |
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Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing |
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A transcriptomic atlas of mouse neocortical layers |
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Whole-genome sequencing identifies a recurrent functional synonymous mutation in melanoma |
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